Category: pcwdCAZome

Phylogram based on Dayhoff amino acid substitution model using an alignment containing 70686 characters. Bayesian analysis was run for 1 million mcmc generations and a strict consensus tree was obtained by summarizing 7500 trees, after burning first 25% of obtained 10,000 trees. Mean tree length and variance are 2.425237E+01 and 7.0550690E-02, respectively. Posterior probabilities more than 95% are marked with circular nodes. Dashed vertical bars and non-dashed vertical bars represents the taxonomic order and taxonomic class in the phylum Ascomycota, respectively

Phylogram based on Dayhoff amino acid substitution model using an alignment containing 38720 characters. Bayesian analysis was run for 1 million mcmc generations and a strict consensus tree was obtained by summarizing 7500 trees, after burning first 25% of obtained 10,000 trees. Mean tree length and variance are 9.480271E+00 and 2.2693320E-02, respectively. Posterior probabilities more than 95% are marked with circular nodes. Dashed vertical bars and non-dashed vertical bars represents the taxonomic order and taxonomic class in the phylum Ascomycota, respectively. LGT inferred by phylogeny and NOTUNG is shown with a blue arrow since it is occuring before Trichoderma and Escovopsis diverged and the respective donors are marked in blue.

Phylogram based on Dayhoff amino acid substitution model using an alignment containing 18546 characters. Bayesian analysis was run for 1 million mcmc generations and a strict consensus tree was obtained by summarizing 7500 trees, after burning first 25% of obtained 10,000 trees. Mean tree length and variance are 7.457580E+00 and 2.1536720E-02, respectively. Posterior probabilities more than 95% are marked with circular nodes. Dashed vertical bars and non-dashed vertical bars represents the taxonomic order and taxonomic class in the phylum Ascomycota, respectively

Phylogram based on Dayhoff amino acid substitution model using an alignment containing 20707 characters. Bayesian analysis was run for 1 million mcmc generations and a strict consensus tree was obtained by summarizing 7500 trees, after burning first 25% of obtained 10,000 trees. Mean tree length and variance are 7.269450E+00 and 3.9080650E-02, respectively. Posterior probabilities more than 95% are marked with circular nodes. Dashed vertical bars and non-dashed vertical bars represents the taxonomic order and taxonomic class in the phylum Ascomycota, respectively. LGT inferred by NOTUNG and Phylogeny is shown with a red arrow to the node and the respective donor is marked in red.

Back to pcwdCAZome evolution