See peer-reviewed articles below
Books
Advances in Trichoderma Biology for Agricultural Applications, (eds) Amaresan, N., Druzhinina I.S., 2022 Springer International Publishing, ISSN 2198-7777
New and Future Developments in Microbial Biotechnology and Bioengineering. Recent Developments in Trichoderma Research. (ed) Gupta, VK., Zeilinger, S., Singh, HB, Druzhinina IS. ELSEVIER, 2020 ISBN: 9780128194539
Biotechnology and Biology of Trichoderma, (eds) Gupta, VK, Schmoll, M., Herrera-Estrella, A., Upadhyay, R.S., Druzhinina, IS., Tuohy M.G, 2014, ELSEVIER, ISBN 978-0-444-59576-8
Book chapters
Cai, F., Dou, K., Wang, P., Chenthamara, K., Chen, J, Druzhinina, I. S. The current state of Trichoderma taxonomy and species identification. In Amaresan, N., Druzhinina I.S., (eds), Advances in Trichoderma Biology and Applications, Springer, in press
Kredics, L.*, Hatvani, L., Allaga, H., Büchner, R., Cai, F., Vágvölgyi, C., Druzhinina, I.S., Naeimi, S. Trichodermosis: Human Infections Caused by Trichoderma Species. In Amaresan, N., Druzhinina, I. S., (eds), Advances in Trichoderma Biology and Applications, Springer, in press
Naeimi, S., Hatvani, L., Marik, T., Balázs, D., Dóczi, I., Cai, F., Vágvölgyi, C., Druzhinina, I.S. Kredics, L. * Trichoderma Green Mould Disease of Cultivated Mushrooms. n N. Amaresan, IS. Druzhinina (eds), Advances in Trichoderma Biology and Applications, Springer, in press
Chen P, Pang G, Cai F, Druzhinina IS 2021 Strain Improvement and Genetic Engineering of Trichoderma for Industrial Applications. In: Reference Module in Life Sciences, Elsevier, 2021 DOI: 10.1016/B978-0-12-819990-9.00029-9
Chenthamara, K., Rahimi, M., Grujic, M., Druzhinina, I. S. and Cai, F. Trichoderma reesei – Methods and Protocols: Ecological genomics and evolution of Trichoderma reesei, Mach-Aigner, A., and Martzy, R., eds. Methods in Molecular Biology, Springer Nature DOI: 10.1007/978-1-0716-1048-0_1
Rahimi, M., Cai, F., Grujic, M., Chenthamara, K., and Druzhinina, I. S. Trichoderma reesei – Methods and Protocols: Molecular identification of Trichoderma reesei. Mach-Aigner, A. and Martzy, R., eds. Methods in Molecular Biology, Springer Nature DOI: 10.1007/978-1-0716-1048-0_14
Cai, F., Kubicek, C. P., Druzhinina, I. S.* 2021. Biofuels and Biodiesel: Genetic transformation of Trichoderma spp. IN: Biofuels and Biodiesel Chhandak B., ed. Methods in Molecular Biology, Springer Nature, 10.1007/978-1-0716-1323-8
Peer-reviewed research articles
Cai F, Zhao Z, Gao R, Chen P, Ding M, Jiang S, Fu Z, Xu P, Chenthamara K, Shen Q, Bayram Akcapinar G, Druzhinina IS 2021 The pleiotropic functions of Intracellular hydrophobins in aerial hyphae and fungal spores. PLoS Genet 17(11): e1009924. https://doi.org/10.1371/journal.pgen.1009924
Yuan Z, Wu Q, Xu L, Druzhinina IS, Stukenbrock EH, Nieuwenhuis BPS, Zhong Z, Liu ZZ, Wang X, Cai F, Kubicek CP, Shan X, Wang J, Shi G, Peng L, and FM Martin The genomic landscape in a relict fir-associated fungus reveals rapid convergent adaptation towards endophytism, The ISME Journal, https://doi.org/10.1038/s41396-021-01176-6
Daly P, Cai F, Kubicek CP, Jiang S, Grujic M, Rahimi MJ, Sheteiwy MS, Giles R, Riaz A, de Vries RP, Bayram Akcapinar G, Wei L, Druzhinina IS From lignocellulose to plastics: knowledge transfer on the degradation approaches by fungi. Biotechnology Advances, https://doi.org/10.1016/j.biotechadv.2021.107770
Cai F, Druzhinina IS (2021) In honor of John Bissett: Authoritative guidelines on molecular identification of Trichoderma. Fungal Diversity. doi: 10.1007/s13225-020-00464-4
Yuan Z, Druzhinina IS, Gibbons JG, Zhong Z, de Peer YV, Rodriguez RJ, Liu Z, Wang X, Wei H, Wu Q, Wang J, Shi G, Cai F, Peng L, Martin FM. Divergence of a genomic island leads to the evolution of melanization in a halophyte root fungus. (2021) The ISME Journal https://doi.org/10.1038/s41396-021-01023-8
Zhang, J., Chen, J., Wu, Y.-F., Wang, Z.-P., Qiu, J.-G., Li, X.-L., Cai, F., Xiao, K.-Q., Sun, X.-X., Rosen, B.P. and Zhao, F.-J. 2021, Oxidation of organoarsenicals and antimonite by a novel flavin monooxygenase widely present in soil bacteria. Environ Microbiol. https://doi.org/10.1111/1462-2920.15488
Brandstaetter C, Fricko N, Rahimi MJ, Fellner J, Ecker-Lala W & Druzhinina IS. 2021The microbial metabolic activity on carbohydrates and polymers impact the biodegradability of landfilled solid waste. Biodegradation . https://doi.org/10.1007/s10532-021-09967-6
Lücking, R, Aime, MC, Robbertse, B, Miller, AN, Aoki, T, Ariyawansa, HA, Cardinali, G, Crous, PW, Druzhinina, IS, Geiser, DM, Hawksworth, DL, Hyde, KD, Irinyi, L, Jeewon, R, Johnston, PR, Kirk, PM, Malosso, E, May, TW, Meyer, W, Nilsson, HR, Öpik, M, Robert, V, Stadler, M, Thines, M, Vu, D, Yurkov, AM, Zhang, N and Schoch, CL. 2021 Fungal taxonomy and sequence-based nomenclature. Nature Microbiology,https://doi.org/10.1038/s41564-021-00888-x
Peng L, Shan X, Yang Z, Wang Z, Druzhinina IS, Pan X, Jin W, He X, Wang X, Zhang X, Martin FM, Yuan Y. 2021 Facultative symbiosis with a saprotrophic soil fungus promotes potassium uptake in American sweetgum trees. Plant, Cell & Environment, in press
Zhao Z, Cai F, Gao R, Ding M, Jiang S, Chen P J, Pang G, Chenthamara K, Shen Q, Bayram-Akcapinar G, Druzhinina S I. 2021. At least three families of hyphosphere small secreted cysteine-rich proteins can optimize surface properties to a moderately hydrophilic state suitable for fungal attachment. Environmental Microbiology. doi: 10.1111/1462-2920.15413
van Bohemen AI, Ruiz N, Zalouk-Vergnoux A, Michaud A, Robiou du Pont T, Druzhinina IS, Atanasova L, Prado S, Bodo B, Meslet-Cladiere L, Cochereau B, Bastide F, Maslard C, Marchi M, Guillemette T, Pouchus YF 2021 Pentadecaibins I–V: 15-Residue peptaibols produced by a marine-derived Trichoderma sp. of the Harzianum clade, Journal of Natural Products doi: 10.1021/acs.jnatprod.0c01355
Kredics L, Naeimi S, Hatvani L, Vágvölgyi C, Cai F, Druzhinina IS, and Manczinger L. The Good, the Bad and the Ugly’ in the shades of green: the genus Trichoderma in the spotlight. 2021 Indian Phytopathology, https://doi.org/10.1007/s42360-021-00352-0
Pang, G., Sun, T., Yu, Z., Yuan, T., Liu, W., Zhu, H., Gao, Q., Yang, D., Kubicek, C.P., Zhang, J. and Shen, Q. (2020), Azaphilones biosynthesis complements the defence mechanism of Trichoderma guizhouense against oxidative stress. Environ Microbiol, 22: 4808-4824. https://doi.org/10.1111/1462-2920.15246
Cai F, Gao R, Zhao Z, Ding M, Jiang S, Yagtu C, Zhu H, Zhang J, Ebner T, Mayrhofer-Reinhartshuber M, Kainz P, Chenthamara K, Akcapinar GB, Shen Q, Druzhinina IS (2020) Evolutionary compromises in fungal fitness: hydrophobins can hinder the adverse dispersal of conidiospores and challenge their survival. The ISME Journal 14 (10):2610-2624. doi:10.1038/s41396-020-0709-0
Ding MY, Chen W, Ma XC, Lv BW, Jiang SQ, Yu YN, Rahimi MJ, Gao RW, Zhao Z, Cai F, Druzhinina IS (2020) Emerging salt marshes as a source of Trichoderma arenarium sp. nov. and other fungal bio effectors for bio saline agriculture. Journal of Applied Microbiology 130: 179–195. doi:10.1111/jam.14751
Gao R, Ding M, Jiang S, Zhao Z, Chenthamara K, Shen Q, Cai F, Druzhinina IS (2020) The Evolutionary and Functional Paradox of Cerato-platanins in Fungi. Applied and Environmental Microbiology 86 (13):e00696-00620. doi:10.1128/AEM.00696-20
Yuan Z, Druzhinina IS, Wang X, Zhang X, Peng L, Labbé J (2020) Insight into a highly polymorphic endophyte isolated from the roots of the halophytic seepweed Suaeda salsa: Laburnicola rhizohalophila sp. nov. (Didymosphaeriaceae, Pleosporales). Fungal Biology, 124, 327-337 https://doi.org/10.1016/j.funbio.2019.10.001.
Hoenigsberger M, Pretzer C, Rahimi MJ, Kopchinskiy AG, Parich A, Laciny A, Metscher B, Chan CM, Lim LBL, Salim KA, Zettel H, Druzhinina IS, Schuhmacher R (2020) Strong antimicrobial and low insecticidal activity of mandibular gland reservoir content in Bornean “exploding ants” Colobopsis explodens Laciny & Zettel, 2018 (Hymenoptera: Formicidae). doi:10.25849/ Myrmecological News 030:201
Selbmann L, Benkő Z, Coleine C, de Hoog S, Donati C, Druzhinina I, Emri T, Ettinger CL, Gladfelter AS, Gorbushina AA, Grigoriev IV, Grube M, Gunde-Cimerman N, Karányi ZÁ, Kocsis B, Kubressoian T, Miklós I, Miskei M, Muggia L, Northen T, Novak-Babič M, Pennacchio C, Pfliegler WP, Pòcsi I, Prigione V, Riquelme M, Segata N, Schumacher J, Shelest E, Sterflinger K, Tesei D, U’Ren JM, Varese GC, Vázquez-Campos X, Vicente VA, Souza EM, Zalar P, Walker AK, Stajich JE. (2020) Shed Light in the DaRk LineagES of the Fungal Tree of Life—STRES. Life. 10(12):362. https://doi.org/10.3390/life10120362
Lücking R, Aime MC, Robbertse B, Miller AN, Ariyawansa HA, Aoki T, Cardinali G, Crous PW, Druzhinina IS, Geiser DM, Hawksworth DL, Hyde KD, Irinyi L, Jeewon R, Johnston PR, Kirk PM, Malosso E, May TW, Meyer W, Öpik M, Robert V, Stadler M, Thines M, Vu D, Yurkov AM, Zhang N, Schoch CL (2020) Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding? IMA Fungus 11 (1):14. doi:10.1186/s43008-020-00033-z
Pérez-Llano Y, Rodríguez-Pupo EC, Druzhinina IS, Chenthamara K, Cai F, Gunde-Cimerman N, Zalar P, Gostinčar C, Kostanjšek R, Folch-Mallol JL, Batista-García RA, Sánchez-Carbente MdR (2020) Stress Reshapes the Physiological Response of Halophile Fungi to Salinity. Cells 9 (3):525. doi:10.3390/cells9030525
Andersson MA, Salo J, Kedves O, Kredics L, Druzhinina I, Kurnitski J, Salonen H. Bioreactivity, Guttation and Agents Influencing Surface Tension of Water Emitted by Actively Growing Indoor Mould Isolates. Microorganisms. 2020; 8(12):1940. https://doi.org/10.3390/microorganisms8121940
Wijayawardene, N.N., Hyde, K., Dai, D., Tang, L., Aptroot, A., Ruíz, R.C., Druzhinina, I.S., Cai, F., Ekanayaka, A.H., Erdoğdu, M., Fiuza, P.O., Gentekaki, E., Goto, B.T., Haelewaters, D., Hongsanan, S., Jeewon, R., Kirk, P., Jayalal, R., Karunarathna, S.C., Wanasinghe, D.N., Lumbsch, H.T., Madrid, H., Maharachchikumbura, S., Monteiro, J.S., Shivaprakash, N., Pfliegler, W.P., Phillips, A.J., Saxena, R.K., Stadler, M., Tian, Q., Tokarev, Y.S., Tsurykau, A., Ertz, D., Lee, H.B., Etayo, J., Vizzini, A., Jones, E., Lin, C.G., Li, W., Dai, Y., Fan, X., McKenzie, E., Shivas, R.G., Hustad, V., Leontyev, D., Hoog, G.S., Niskanen, T., Boekhout, T., Gaya, E., Thines, M., & Péter, P.V. (2020) A dynamic portal for a community-driven, continuously updated classification of Fungi and fungus-like organisms: outlineoffungi.org. Mycosphere 11 (1):1514-1526. doi:10.5943/mycosphere/11/1/11
Grujić M, Dojnov B, Potočnik I, Atanasova L, Duduk B, Srebotnik E, Druzhinina IS, Kubicek CP, Vujčić Z (2019) Superior cellulolytic activity of Trichoderma guizhouense on raw wheat straw. World Journal of Microbiology and Biotechnology 35 (12):194. doi:10.1007/s11274-019-2774-y
Hatvani L, Homa M, Chenthamara K, Cai F, Kocsubé S, Atanasova L, Mlinaric-Missoni E, Manikandan P, Revathi R, Dóczi I, Bogáts G, Narendran V, Büchner R, Vágvölgyi C, Druzhinina IS, Kredics L (2019) Agricultural systems as potential sources of emerging human mycoses caused by Trichoderma: a successful, common phylotype of Trichoderma longibrachiatum in the frontline. FEMS Microbiology Letters 366 (21):fnz246. doi:10.1093/femsle/fnz246
Hoenigsberger M, Kopchinskiy A, Bueschl C, Parich A, Laciny A, Zettel H, Salim K, Lim L, Druzhinina I, Schuhmacher R (2019) Volatiles from the Mandibular Gland Reservoir Content of Colobopsis explodens Laciny and Zettel, 2018, Worker Ants (Hymenoptera: Formicidae). Molecules 24 (19):3468. doi:10.3390/molecules24193468
Kubicek CP, Steindorff AS, Chenthamara K, Manganiello G, Henrissat B, Zhang J, Cai F, Kopchinskiy AG, Kubicek EM, Kuo A, Baroncelli R, Sarrocco S, Noronha EF, Vannacci G, Shen Q, Grigoriev IV, Druzhinina IS (2019) Evolution and comparative genomics of the most common Trichoderma species. BMC Genomics 20 (1):485. doi:10.1186/s12864-019-5680-7
Laciny A, Nemeschkal HL, Zettel H, Metscher B, Druzhinina IS (2019) Caste-specific morphological modularity in the ant tribe Camponotini (Hymenoptera, Formicidae). BMC Zoology 4 (1):9. doi:10.1186/s40850-019-0048-7
Marik T, Tyagi C, Balázs D, Urbán P, Szepesi Á, Bakacsy L, Endre G, Rakk D, Szekeres A, Andersson MA, Salonen H, Druzhinina IS, Vágvölgyi C, Kredics L (2019) Structural diversity and bioactivities of peptaibol compounds from the Longibrachiatum clade of the filamentous fungal genus Trichoderma. Frontiers in Microbiology doi:10.3389/fmicb.2019.01434
Zhang J, Miao Y, Rahimi MJ, Zhu H, Steindorff A, Schiessler S, Cai F, Pang G, Chenthamara K, Xu Y, Kubicek CP, Shen Q, Druzhinina IS (2019) Guttation capsules containing hydrogen peroxide: an evolutionarily conserved NADPH oxidase gains a role in wars between related fungi. Environmental Microbiology 21 (8):2644-2658. doi:10.1111/1462-2920.14575